Cheap Flights from El Nido to Manila Ninoy Aquino

Compare El Nido to Manila Ninoy Aquino flight deals

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Flight deals from El Nido Airport to Manila Ninoy Aquino Airport

Looking for a cheap last-minute deal or the best return flight from El Nido to Manila Ninoy Aquino? Find the lowest prices on one-way and return tickets right here.

Manila.$524 per passenger.Departing Mon, 1 Jun, returning Sun, 7 Jun.Return flight with Cebgo and Cebu Pacific.Outbound indirect flight with Cebgo, departs from El Nido on Mon, 1 Jun, arriving in Manila Ninoy Aquino.Inbound indirect flight with Cebu Pacific, departs from Manila Ninoy Aquino on Sun, 7 Jun, arriving in El Nido.Price includes taxes and charges.From $524, select.

Manila.$649 per passenger.Departing Wed, 18 Mar, returning Wed, 25 Mar.Return flight with Air Swift.Outbound direct flight with Air Swift departs from El Nido on Wed, 18 Mar, arriving in Manila Ninoy Aquino.Inbound direct flight with Air Swift departs from Manila Ninoy Aquino on Wed, 25 Mar, arriving in El Nido.Price includes taxes and charges.From $649, select.

Manila.$684 per passenger.Departing Fri, 1 May, returning Tue, 5 May.Return flight with Cebgo and Cebu Pacific.Outbound indirect flight with Cebgo, departs from El Nido on Fri, 1 May, arriving in Manila Ninoy Aquino.Inbound indirect flight with Cebu Pacific, departs from Manila Ninoy Aquino on Tue, 5 May, arriving in El Nido.Price includes taxes and charges.From $684, select.

Find the cheapest month to fly from El Nido to Manila Ninoy Aquino

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like El Nido to Manila Ninoy Aquino flights are currently cheapest in June.

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Direct flights from El Nido to Manila Ninoy Aquino

El Nido to Manila Ninoy Aquino: Alternative routes

Compare routes from El Nido to Manila below. You may find an airport to fly into that's cheaper, faster, or easier than Manila Ninoy Aquino.

Manila Ninoy Aquino

10km from central Manila

Closest

from $524

Search flights

Luzon Clark International

80km from central Manila

Cheapest

from $214

Search flights

El Nido to Manila: Flight information

The things to know before you go.

Cheapest flight found	$524
Cheapest month to fly	June
Average flight time	1 hr, 36 mins
Most popular airline	Air Swift
Average flights per week	63

Finding cheap flights from El Nido to Manila Ninoy Aquino: Frequently asked questions

How much are return flights from El Nido to Manila Ninoy Aquino?

The best price we found for a return flight from El Nido to Manila Ninoy Aquino is $524. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.

How long does it take to fly from El Nido to Manila Ninoy Aquino?

1 hour and 36 minutes is the average flight time from El Nido to Manila Ninoy Aquino.

Which airlines fly direct from El Nido to Manila Ninoy Aquino?

Air Swift and Cebgo fly direct from El Nido to Manila Ninoy Aquino.

How many flights are there a week from El Nido to Manila Ninoy Aquino?

As of March 2026, there are 58 flights per week flying from El Nido to Manila Ninoy Aquino.

When is the cheapest time to fly from El Nido to Manila Ninoy Aquino?

The cheapest month to fly from El Nido to Manila Ninoy Aquino is usually June.

Which upcoming date is cheapest to fly from El Nido Airport to Manila Ninoy Aquino Airport on?

After crunching the numbers on our flight calendar, we found that it's currently cheapest to fly from El Nido Airport to Manila Ninoy Aquino Airport on Monday, 1 June 2026.

Can I get a direct flight from El Nido Airport to Manila Ninoy Aquino Airport?

Yes – the average flight time is 1 hour and 36 minutes.

How can I find the best flight deal to Manila Ninoy Aquino?

We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to Manila Ninoy Aquino but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.

Which is the cheapest airline to fly from El Nido Airport to Manila Ninoy Aquino with?

Currently, Cebgo and Air Swift offer the cheapest flight tickets to Manila Ninoy Aquino.

Flying from El Nido Airport (ENI) to Ninoy Aquino International Airport (MNL): what you need to know

The average time for a direct flight from El Nido Airport to Ninoy Aquino International Airport is 1 hour 30 minutes.
El Nido and Manila follow the same timezone, UTC+8.
Every week, there are 35 El Nido Airport to Ninoy Aquino International Airport flights. To jet off early, go for the 08:10 AirSWIFT flight. If you're eager to make the most of your time before flying, the last departure is at 17:25 with AirSWIFT.
Get to the airport on time so you don't miss your ENI to MNL flight. Be there at least two hours ahead for international flights and an hour early for domestic departures to prevent a last-minute sprint to your gate.
Flying during a peak month like May? School holidays and other high seasons can result in longer lines at check-in and security. Be extra cautious and arrive up to four hours ahead of international flights and two hours before a domestic departure.
AirSWIFT has direct flights from El Nido Airport to Ninoy Aquino International Airport. Book with this popular airline, then get ready to check out the sights in Manila — and maybe even more of Philippines if you have time.
AirSWIFT has the highest passenger demand on this route.

How to find the cheapest flights from El Nido Airport (ENI) to Ninoy Aquino International Airport (MNL)

The cheapest price we've seen for a one-way El Nido Airport to Ninoy Aquino International Airport flight is $112. A round-trip ticket is currently $524. Depending on the availability when you book, these fares can change.
Score cheap tickets from ENI to MNL by booking nine months ahead. According to our research, that's the sweet spot for landing a bargain.
August is the cheapest month for flights from El Nido Airport to Ninoy Aquino International Airport. If you prefer to fly at a different time of year, the 'Whole month' tool will show you the lowest airfares for every month.
There's no need to check back in every day to find out if fares have gone down when you create a Price Alert. We'll update you as soon as a special offer becomes available on cheap flights from ENI to MNL.
Choose your preferred departure and arrival times, airlines and number of stops with the filters. Alternatively, sort your results by 'Cheapest' to get the best deals on flights from El Nido Airport to Ninoy Aquino International Airport.

Handy information about El Nido Airport (ENI)

Central El Nido to El Nido Airport is approximately 2 kilometres. Depending on traffic, it'll take about 5 minutes to get there if you're catching a cab, ride-sharing or driving.
Expect a trip time of around 15 minutes on public transport.
Get your break off to a hassle-free start by staying near ENI. Whether you're catching an early flight from El Nido Airport to Ninoy Aquino International Airport or just don't want to be rushed, these hotels are ideal:

Arriving at Ninoy Aquino International Airport (MNL)

Consider staying in a hotel near MNL if you're taking a late El Nido Airport to Ninoy Aquino International Airport flight. Pick one of these options and skip the long transfer after landing:
Go where the road takes you with a Ninoy Aquino International Airport rental car. Pick up your wheels from Hertz, Thrifty or Europcar and venture far and wide through Manila and beyond.
Lock in the best deal by booking your ride from Ninoy Aquino International Airport around four weeks ahead of your trip.

Getting from Ninoy Aquino International Airport (MNL) to central Manila

Ninoy Aquino International Airport to central Manila has a drive time of about 35 minutes. It's approximately 13 kilometres away.
It takes around 1 hour 15 minutes to get there using public transport.

When to fly to Ninoy Aquino International Airport (MNL)

April is the busiest month for flights from El Nido Airport to Ninoy Aquino International Airport. To skip the crowds, visit Manila in February.
Lock in your flight from El Nido Airport to Ninoy Aquino International Airport for April if you want to visit Manila during its warmest month. You can expect temperatures of between 23ºC and 35ºC.
Look for cheap tickets from ENI to MNL in January if you like travelling in cooler conditions. Temperatures are at their lowest around then, ranging between 21ºC and 30ºC on average.

Explore more of Philippines

Quezon City is just one of the many cities in Philippines waiting to be discovered after you've seen Manila. Around 8 kilometres away to the north-east, check out popular attractions including Pinky Spikes, Province and GEE’s SPOT GARDEN by Gerard.
Around 13 kilometres south-east of Manila, Taguig is another favourite stop in Philippines. Experience major highlights starting with Sib Plants, Philippine Science Heritage Centre or Salinlahi Museum and BGC Astronaut Mural.