Cheap Flights from Medellin to San Juan

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Compare Medellin to San Juan flight deals

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Flight deals from Medellin to San Juan

Looking for a cheap last-minute deal or the best return flight from Medellin to San Juan? If you want to travel next month, return fares start from $492. Find the lowest prices on one-way and return tickets right here.

San Juan.$492 per passenger.Departing Fri, 16 Oct, returning Sun, 18 Oct.Return flight with Copa.Outbound indirect flight with Copa, departs from Medellin Jose Maria Cordova on Fri, 16 Oct, arriving in San Juan Luis Munoz Marin.Inbound indirect flight with Copa, departs from San Juan Luis Munoz Marin on Sun, 18 Oct, arriving in Medellin Jose Maria Cordova.Price includes taxes and charges.From $492, select.

San Juan.$493 per passenger.Departing Thu, 29 Oct, returning Fri, 6 Nov.Return flight with Copa.Outbound indirect flight with Copa, departs from Medellin Jose Maria Cordova on Thu, 29 Oct, arriving in San Juan Luis Munoz Marin.Inbound indirect flight with Copa, departs from San Juan Luis Munoz Marin on Fri, 6 Nov, arriving in Medellin Jose Maria Cordova.Price includes taxes and charges.From $493, select.

San Juan.$493 per passenger.Departing Thu, 18 Feb, returning Sun, 28 Feb.Return flight with Copa.Outbound indirect flight with Copa, departs from Medellin Jose Maria Cordova on Thu, 18 Feb, arriving in San Juan Luis Munoz Marin.Inbound indirect flight with Copa, departs from San Juan Luis Munoz Marin on Sun, 28 Feb, arriving in Medellin Jose Maria Cordova.Price includes taxes and charges.From $493, select.

San Juan.$495 per passenger.Departing Thu, 22 Apr, returning Mon, 26 Apr.Return flight with Copa.Outbound indirect flight with Copa, departs from Medellin Jose Maria Cordova on Thu, 22 Apr, arriving in San Juan Luis Munoz Marin.Inbound indirect flight with Copa, departs from San Juan Luis Munoz Marin on Mon, 26 Apr, arriving in Medellin Jose Maria Cordova.Price includes taxes and charges.From $495, select.

San Juan.$497 per passenger.Departing Sat, 30 Jan, returning Thu, 4 Feb.Return flight with Copa.Outbound indirect flight with Copa, departs from Medellin Jose Maria Cordova on Sat, 30 Jan, arriving in San Juan Luis Munoz Marin.Inbound indirect flight with Copa, departs from San Juan Luis Munoz Marin on Thu, 4 Feb, arriving in Medellin Jose Maria Cordova.Price includes taxes and charges.From $497, select.

San Juan.$511 per passenger.Departing Fri, 7 May, returning Sun, 9 May.Return flight with Copa.Outbound indirect flight with Copa, departs from Medellin Jose Maria Cordova on Fri, 7 May, arriving in San Juan Luis Munoz Marin.Inbound indirect flight with Copa, departs from San Juan Luis Munoz Marin on Sun, 9 May, arriving in Medellin Jose Maria Cordova.Price includes taxes and charges.From $511, select.

San Juan.$511 per passenger.Departing Tue, 10 Nov, returning Tue, 17 Nov.Return flight with Copa.Outbound indirect flight with Copa, departs from Medellin Jose Maria Cordova on Tue, 10 Nov, arriving in San Juan Luis Munoz Marin.Inbound indirect flight with Copa, departs from San Juan Luis Munoz Marin on Tue, 17 Nov, arriving in Medellin Jose Maria Cordova.Price includes taxes and charges.From $511, select.

San Juan.$525 per passenger.Departing Thu, 22 Apr, returning Mon, 26 Apr.Return flight with Avianca.Outbound direct flight with Avianca departs from Medellin Jose Maria Cordova on Thu, 22 Apr, arriving in San Juan Luis Munoz Marin.Inbound direct flight with Avianca departs from San Juan Luis Munoz Marin on Mon, 26 Apr, arriving in Medellin Jose Maria Cordova.Price includes taxes and charges.From $525, select.

San Juan.$527 per passenger.Departing Wed, 3 Mar, returning Sat, 13 Mar.Return flight with Copa.Outbound indirect flight with Copa, departs from Medellin Jose Maria Cordova on Wed, 3 Mar, arriving in San Juan Luis Munoz Marin.Inbound indirect flight with Copa, departs from San Juan Luis Munoz Marin on Sat, 13 Mar, arriving in Medellin Jose Maria Cordova.Price includes taxes and charges.From $527, select.

San Juan.$528 per passenger.Departing Sat, 20 Feb, returning Mon, 1 Mar.Return flight with Avianca.Outbound direct flight with Avianca departs from Medellin Jose Maria Cordova on Sat, 20 Feb, arriving in San Juan Luis Munoz Marin.Inbound direct flight with Avianca departs from San Juan Luis Munoz Marin on Mon, 1 Mar, arriving in Medellin Jose Maria Cordova.Price includes taxes and charges.From $528, select.

San Juan.$529 per passenger.Departing Fri, 22 Jan, returning Thu, 28 Jan.Return flight with Copa.Outbound indirect flight with Copa, departs from Medellin Jose Maria Cordova on Fri, 22 Jan, arriving in San Juan Luis Munoz Marin.Inbound indirect flight with Copa, departs from San Juan Luis Munoz Marin on Thu, 28 Jan, arriving in Medellin Jose Maria Cordova.Price includes taxes and charges.From $529, select.

San Juan.$531 per passenger.Departing Wed, 3 Mar, returning Sat, 13 Mar.Return flight with Avianca.Outbound direct flight with Avianca departs from Medellin Jose Maria Cordova on Wed, 3 Mar, arriving in San Juan Luis Munoz Marin.Inbound direct flight with Avianca departs from San Juan Luis Munoz Marin on Sat, 13 Mar, arriving in Medellin Jose Maria Cordova.Price includes taxes and charges.From $531, select.

San Juan.$533 per passenger.Departing Sun, 17 Jan, returning Mon, 25 Jan.Return flight with Avianca.Outbound direct flight with Avianca departs from Medellin Jose Maria Cordova on Sun, 17 Jan, arriving in San Juan Luis Munoz Marin.Inbound direct flight with Avianca departs from San Juan Luis Munoz Marin on Mon, 25 Jan, arriving in Medellin Jose Maria Cordova.Price includes taxes and charges.From $533, select.

San Juan.$535 per passenger.Departing Fri, 2 Jul, returning Mon, 5 Jul.Return flight with Avianca.Outbound direct flight with Avianca departs from Medellin Jose Maria Cordova on Fri, 2 Jul, arriving in San Juan Luis Munoz Marin.Inbound direct flight with Avianca departs from San Juan Luis Munoz Marin on Mon, 5 Jul, arriving in Medellin Jose Maria Cordova.Price includes taxes and charges.From $535, select.

San Juan.$535 per passenger.Departing Thu, 22 Oct, returning Mon, 26 Oct.Return flight with Avianca.Outbound direct flight with Avianca departs from Medellin Jose Maria Cordova on Thu, 22 Oct, arriving in San Juan Luis Munoz Marin.Inbound direct flight with Avianca departs from San Juan Luis Munoz Marin on Mon, 26 Oct, arriving in Medellin Jose Maria Cordova.Price includes taxes and charges.From $535, select.

San Juan.$535 per passenger.Departing Mon, 14 Jun, returning Sat, 19 Jun.Return flight with Avianca.Outbound direct flight with Avianca departs from Medellin Jose Maria Cordova on Mon, 14 Jun, arriving in San Juan Luis Munoz Marin.Inbound direct flight with Avianca departs from San Juan Luis Munoz Marin on Sat, 19 Jun, arriving in Medellin Jose Maria Cordova.Price includes taxes and charges.From $535, select.

Find the cheapest month to fly from Medellin to San Juan

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Medellin to San Juan flights are currently cheapest in October.

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Direct flights from Medellin to San Juan

Alternative Medellin to San Juan routes

Looking for the cheapest, fastest or easiest route from Medellin to San Juan? You could fly into the following airports instead.

Medellin to San Juan: Flight information

The things to know before you go.

Cheapest flight found	$492
Cheapest month to fly	October
Average flight time	2 hrs, 49 mins
Most popular airline	Avianca
Average flights per week	20

Finding cheap flights from Medellin to San Juan: Frequently asked questions

How many airports are there in San Juan?

There are 6 airports in San Juan: San Juan Isla Grande, San Juan Luis Munoz Marin, Roosevelt Roads, Ponce, Vieques, and Culebra.

How much are return flights from Medellin to San Juan?

The best price we found for a return flight from Medellin to San Juan is $492. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.

How long does it take to fly from Medellin to San Juan?

2 hours and 49 minutes is the average flight time from Medellin to San Juan.

Which airlines fly direct from Medellin to San Juan?

Avianca and jetBlue fly direct from Medellin to San Juan.

How many flights are there a week from Medellin to San Juan?

As of September 2026, there are 20 flights per week flying from Medellin to San Juan.

When is the cheapest time to fly from Medellin to San Juan?

The cheapest month to fly from Medellin to San Juan is usually October.

Which is the cheapest airport to fly into in San Juan?

If you're flying from Medellin, the cheapest airport near San Juan is San Juan Luis Munoz Marin – which is 11.3 km away from the centre of San Juan. We've found flights into this airport from $492.

Which upcoming date is cheapest to fly from Medellin to San Juan on?

After crunching the numbers on our flight calendar, we found that it is currently cheapest to fly from Medellin to San Juan on Friday, 16 October 2026.

Can I get a direct flight from Medellin to San Juan?

Yes – the average flight time is 2 hours and 49 minutes.

How can I get the best flight deal from Medellin to San Juan?

We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to San Juan but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.

When is the best time to book flights to San Juan?

We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to San Juan is around 40 days in advance, so don’t leave your flight to the last minute.

What’s the weather like in San Juan?

In September, the average temperature is usually around 28°C. August is typically the warmest month in San Juan, when it usually averages around 30°C. You can expect the least rain in January. The coldest month is February, with temperatures averaging 22°C. The rainiest month is September.

Which is the cheapest airline to fly from Medellin to San Juan with?

The cheapest airline that flies to San Juan is Copa. And the cheapest airline that flies to San Juan Luis Munoz Marin Airport is Avianca.

Flying from Medellin to San Juan: what you need to know

Medellin Jose Maria Cordova Airport (MDE) is Medellin's main airport. Explore your options for reserving a flight from Medellin to San Juan jetting off from here.
San Juan Luis Munoz Marin Airport (SJU) is where you'll be landing in San Juan.
Book a direct Medellin to San Juan flight and you'll be travelling for an average of 2 hours 50 minutes.
San Juan's timezone is UTC-4, which makes San Juan one hour ahead of Medellin.
With 14 flights a week between the two airports, Medellin Jose Maria Cordova Airport (MDE) to San Juan Luis Munoz Marin Airport (SJU) is the most popular route. Board the earliest flight from Medellin to San Juan with AVIANCA at 08:40. If you prefer to make the most of your day before jetting off, the latest departure from MDE to SJU is with JetBlue Airways at 16:11.
Leave plenty of time to make your Medellin to San Juan flight. Generally, it's best to arrive at least two hours before international departures and an hour ahead for domestic flights.
Flying over a peak time such as December? Major public holidays and other popular seasons can lead to longer lines and delays at security. Play things extra safe and arrive up to four hours before international flights and two hours before a domestic departure.

How to find the cheapest flights from Medellin to San Juan

To find cheap Medellin to San Juan flights, book early. Airlines tend to offer lower fares when tickets first go on sale.
If you're flexible with your travel plans, try using the 'Whole month' search tool. It'll give you the cheapest price across each month when looking for your plane ticket from Medellin to San Juan.
Getting a cheap flight from Medellin to San Juan is easy with Price Alerts. Simply set up one of these automatic alerts and we'll let you know as soon as a better deal is available.
Save on your Medellin to San Juan flight with the help of our filters. Select your preferred duration, departure time and airlines, then sort the results by 'Cheapest' for the best deals.

Flying from Medellin

Medellin Jose Maria Cordova Airport (MDE)

You can get a direct flight from Medellin to San Juan leaving from Medellin Jose Maria Cordova Airport (MDE). Begin your journey at MDE and arrive at San Juan Luis Munoz Marin Airport (SJU).
Keep an eye out for deals with JetBlue Airways. This airline offers direct Medellin to San Juan plane tickets out of MDE.
Consider adding a stopover to potentially find a cheaper Medellin to San Juan flight. Simply uncheck 'Direct flights only' when searching for departures from Medellin Jose Maria Cordova Airport. Break up your trip (and maybe save some cash) by stopping at one of these airports:
- Bogota Airport (BOG)
- Panama City Tocumen International Airport (PTY)
- Punta Cana Airport (PUJ)
The journey from central Medellin to MDE takes around 1 hour 15 minutes on public transport. If you drive, ride-share or take a taxi, you'll cover the 18 kilometres in 45 minutes or so, depending on traffic conditions.
Need a handy hotel close to Medellin Jose Maria Cordova Airport? If you're boarding an early flight from Medellin to San Juan, these accommodation options will put you moments from your departure gate:
76% of flights taking off from Medellin Jose Maria Cordova Airport make it to their destination on time.

Arriving in San Juan

San Juan Luis Munoz Marin Airport (SJU)

San Juan Luis Munoz Marin Airport (SJU) to central San Juan takes about 20 minutes by car. The centre is roughly 11 kilometres away.
Getting to the centre by public transport typically takes 1 hour.
The last thing you need is a long journey to your hotel if you're getting in late on a flight from Medellin to San Juan. Stay at one of these accommodation options near SJU instead:
Grab a San Juan Luis Munoz Marin Airport rental car and discover San Juan and beyond with your own wheels. Sixt, Ace Rent a Car and U-Save are leading providers to choose from here.
To lock in the lowest price, reserve your vehicle from San Juan Luis Munoz Marin Airport about two weeks in advance of your Medellin to San Juan flight.

San Juan Isla Grande Airport (SIG)

Central San Juan is around 0.80 kilometres from San Juan Isla Grande Airport (SIG). Step off your flight from Medellin to San Juan and then keep your eyes peeled for any airport signs that'll help you reach the city centre.
Hang the 'Do not disturb' sign on your door and rest at a hotel near SIG. Here are a few options where you can settle in after your flight from Medellin to San Juan:

Best time to go to San Juan

It's time to work out your travel dates for your flight from Medellin to San Juan. July is the busiest month for a trip to San Juan. If you like a more relaxed atmosphere, go in March.
Lock in a Medellin to San Juan ticket departing in August if you're eager to experience the city during its warmest month. You can expect temperatures in San Juan to range from 24ºC to 32ºC.
February sees average temperatures of between 21ºC and 28ºC. Search for cheap flights from Medellin to San Juan around that time if you want to travel when it's cooler.

More about San Juan

When it comes to looking for somewhere to lay your head, you'll find the best stays in San Juan right here. Check out these options as soon as you've booked your flight from Medellin to San Juan:
Balneario El Escambron and La Garita del morro de san juan bahia are just a couple of the leading attractions to add to your San Juan travel itinerary. Continue your sightseeing adventures at Beach San Juan.

Explore more of Puerto Rico

You've done San Juan, now it's time to explore other corners of Puerto Rico. Travel about 13 kilometres southwest to Bayamon to check off its must-visit sights. From Ron del Barrilito - Hacienda Santa Ana to Parque de las Ciencias by Toroverde Power by Claro and Parque Recreativo Río Bayamón, your itinerary will be busy.
Around 18 kilometres southeast of San Juan, Carolina is another essential stop in Puerto Rico. Experience this destination's highlights firsthand at Isla Verde Beach, Carolina Public Beach and Balneario Isla Verde.