Cheap Flights from Crete Heraklion to Mykonos

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Travellers and cabin class, 1 Adult, Economy

Compare Crete Heraklion to Mykonos flight deals

Find the cheapest month or even day of the year to fly to Mykonos

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Flight deals from Crete Heraklion to Mykonos

Looking for a cheap last-minute deal or the best return flight from Crete Heraklion Airport to Mykonos Airport? If you want to travel next month, return fares start from $314. Find the lowest prices on one-way and return tickets right here.

Mykonos.$170 per passenger.Departing Sun, 13 Sep, returning Fri, 18 Sep.Return flight with Aegean Airlines.Outbound direct flight with Aegean Airlines departs from Crete Heraklion on Sun, 13 Sep, arriving in Mykonos.Inbound direct flight with Aegean Airlines departs from Mykonos on Fri, 18 Sep, arriving in Crete Heraklion.Price includes taxes and charges.From $170, select.

Mykonos.$276 per passenger.Departing Tue, 1 Dec, returning Thu, 3 Dec.Return flight with SKY express.Outbound indirect flight with SKY express, departs from Crete Heraklion on Tue, 1 Dec, arriving in Mykonos.Inbound indirect flight with SKY express, departs from Mykonos on Thu, 3 Dec, arriving in Crete Heraklion.Price includes taxes and charges.From $276, select.

Mykonos.$294 per passenger.Departing Thu, 5 Nov, returning Thu, 12 Nov.Return flight with SKY express.Outbound indirect flight with SKY express, departs from Crete Heraklion on Thu, 5 Nov, arriving in Mykonos.Inbound indirect flight with SKY express, departs from Mykonos on Thu, 12 Nov, arriving in Crete Heraklion.Price includes taxes and charges.From $294, select.

Mykonos.$308 per passenger.Departing Thu, 26 Nov, returning Thu, 3 Dec.Return flight with SKY express.Outbound indirect flight with SKY express, departs from Crete Heraklion on Thu, 26 Nov, arriving in Mykonos.Inbound indirect flight with SKY express, departs from Mykonos on Thu, 3 Dec, arriving in Crete Heraklion.Price includes taxes and charges.From $308, select.

Mykonos.$314 per passenger.Departing Sat, 3 Oct, returning Mon, 12 Oct.Return flight with SKY express.Outbound indirect flight with SKY express, departs from Crete Heraklion on Sat, 3 Oct, arriving in Mykonos.Inbound indirect flight with SKY express, departs from Mykonos on Mon, 12 Oct, arriving in Crete Heraklion.Price includes taxes and charges.From $314, select.

Mykonos.$314 per passenger.Departing Tue, 22 Sep, returning Mon, 12 Oct.Return flight with SKY express.Outbound indirect flight with SKY express, departs from Crete Heraklion on Tue, 22 Sep, arriving in Mykonos.Inbound indirect flight with SKY express, departs from Mykonos on Mon, 12 Oct, arriving in Crete Heraklion.Price includes taxes and charges.From $314, select.

Mykonos.$333 per passenger.Departing Sat, 24 Apr, returning Tue, 27 Apr.Return flight with SKY express.Outbound indirect flight with SKY express, departs from Crete Heraklion on Sat, 24 Apr, arriving in Mykonos.Inbound indirect flight with SKY express, departs from Mykonos on Tue, 27 Apr, arriving in Crete Heraklion.Price includes taxes and charges.From $333, select.

Mykonos.$343 per passenger.Departing Thu, 29 Oct, returning Thu, 12 Nov.Return flight with SKY express.Outbound indirect flight with SKY express, departs from Crete Heraklion on Thu, 29 Oct, arriving in Mykonos.Inbound indirect flight with SKY express, departs from Mykonos on Thu, 12 Nov, arriving in Crete Heraklion.Price includes taxes and charges.From $343, select.

Mykonos.$396 per passenger.Departing Sat, 24 Apr, returning Sat, 8 May.Return flight with SKY express.Outbound indirect flight with SKY express, departs from Crete Heraklion on Sat, 24 Apr, arriving in Mykonos.Inbound indirect flight with SKY express, departs from Mykonos on Sat, 8 May, arriving in Crete Heraklion.Price includes taxes and charges.From $396, select.

Mykonos.$396 per passenger.Departing Fri, 7 May, returning Sat, 8 May.Return flight with SKY express.Outbound indirect flight with SKY express, departs from Crete Heraklion on Fri, 7 May, arriving in Mykonos.Inbound indirect flight with SKY express, departs from Mykonos on Sat, 8 May, arriving in Crete Heraklion.Price includes taxes and charges.From $396, select.

Mykonos.$438 per passenger.Departing Fri, 1 Jan, returning Tue, 5 Jan.Return flight with Aegean Airlines.Outbound indirect flight with Aegean Airlines, departs from Crete Heraklion on Fri, 1 Jan, arriving in Mykonos.Inbound indirect flight with Aegean Airlines, departs from Mykonos on Tue, 5 Jan, arriving in Crete Heraklion.Price includes taxes and charges.From $438, select.

Mykonos.$475 per passenger.Departing Sun, 20 Jun, returning Sat, 26 Jun.Return flight with Aegean Airlines.Outbound indirect flight with Aegean Airlines, departs from Crete Heraklion on Sun, 20 Jun, arriving in Mykonos.Inbound indirect flight with Aegean Airlines, departs from Mykonos on Sat, 26 Jun, arriving in Crete Heraklion.Price includes taxes and charges.From $475, select.

Mykonos.$542 per passenger.Departing Fri, 2 Jul, returning Sun, 4 Jul.Return flight with Aegean Airlines.Outbound indirect flight with Aegean Airlines, departs from Crete Heraklion on Fri, 2 Jul, arriving in Mykonos.Inbound indirect flight with Aegean Airlines, departs from Mykonos on Sun, 4 Jul, arriving in Crete Heraklion.Price includes taxes and charges.From $542, select.

Find the cheapest month to fly from Crete Heraklion to Mykonos

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Crete Heraklion to Mykonos flights are currently cheapest in September.

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Direct flights from Crete Heraklion to Mykonos

Crete Heraklion to Mykonos: Alternative routes

Compare routes from Crete Heraklion to Mykonos below. You may find an airport to fly into that's cheaper, faster, or easier than Mykonos.

Heraklion to Mykonos: Flight information

The things to know before you go.

Cheapest flight found	$170
Cheapest month to fly	September
Average flight time	50 mins
Most popular airline	Aegean Airlines
Average flights per week	4

Finding cheap flights from Crete Heraklion to Mykonos: Frequently asked questions

How much are return flights from Crete Heraklion to Mykonos?

The best price we found for a return flight from Crete Heraklion to Mykonos is $170. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.

How long does it take to fly from Crete Heraklion to Mykonos?

50 minutes is the average flight time from Crete Heraklion to Mykonos.

Which airlines fly direct from Crete Heraklion to Mykonos?

Aegean Airlines and Olympic Air fly direct from Crete Heraklion to Mykonos.

How many flights are there a week from Crete Heraklion to Mykonos?

As of September 2026, there are 4 flights per week flying from Crete Heraklion to Mykonos.

When is the cheapest time to fly from Crete Heraklion to Mykonos?

The cheapest month to fly from Crete Heraklion to Mykonos is usually September.

Which upcoming date is cheapest to fly from Crete Heraklion Airport to Mykonos Airport on?

After crunching the numbers on our flight calendar, we found that it's currently cheapest to fly from Crete Heraklion Airport to Mykonos Airport on Sunday, 13 September 2026.

Can I get a direct flight from Crete Heraklion Airport to Mykonos Airport?

Yes – the average flight time is 50 minutes.

How can I find the best flight deal to Mykonos?

We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to Mykonos but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.

When is the best time to book flights to Mykonos?

We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to Mykonos is around 40 days in advance, so don’t leave your flight to the last minute.

Which is the cheapest airline to fly from Crete Heraklion Airport to Mykonos with?

Currently, Aegean Airlines offers the cheapest flight tickets to Mykonos.

Travelling from Crete Heraklion Airport (HER) to Mykonos Airport (JMK): what you need to know

The average time for a direct flight from Crete Heraklion Airport to Mykonos Airport is 50 minutes.
Mykonos's timezone is UTC+2, which is the same as Heraklion.
Give yourself plenty of time to catch your HER to JMK flight. As a rule of thumb, arrive two hours before international departures and an hour ahead for domestic flights.
During popular months like August, it's a good idea to get to the airport earlier than normal. Arrive two hours before domestic departures and four hours ahead of international flights when you travel during peak periods in general.
Travelling to Mykonos (and then discovering more of Greece!) is a breeze with Aegean Airlines. This popular airline offers direct flights from Crete Heraklion Airport to Mykonos Airport.
The majority of passengers choose to travel with Aegean Airlines on this route.
If you want to add a stop to your trip, simply uncheck 'Direct flights only' when searching for your ticket from Crete Heraklion Airport to Mykonos Airport. Here are the top stopovers between HER and JMK:
- Rome Fiumicino Airport
- Athens International Airport
- Bologna International Airport

How to find the cheapest flights from Crete Heraklion Airport (HER) to Mykonos Airport (JMK)

$52 is currently the lowest price for a one-way Crete Heraklion Airport to Mykonos Airport flight. Return flights start at $170. These prices may change depending on demand and availability.
It's usually best to book early if you're hoping to get cheap tickets from HER to JMK. That's because airlines adjust prices based on demand, which tends to rise closer to the date of departure.
Finding cheap flights from Crete Heraklion Airport to Mykonos Airport is more likely if you're flexible with your travel dates. Use the 'Whole month' search function to see the lowest prices across the month and snap up a great deal.
Getting your hands on cheap flights from HER to JMK is a breeze with Price Alerts. All you need to do is create one of these automatic alerts and we'll get in touch as soon as there's a better deal.
Tailor your flights with filters. Choose your preferred departure and arrival times, airlines and total journey duration. You can also sort results by 'Best,' 'Fastest' or 'Cheapest' flights from Crete Heraklion Airport to Mykonos Airport.

Handy information about Crete Heraklion Airport (HER)

77% of flights leaving from Crete Heraklion Airport make it to their destination on time.
Crete Heraklion Airport is about 5 kilometres from central Heraklion. If you're driving, ride-sharing or catching a taxi from the centre, it'll take 15 minutes or so to arrive, depending on the traffic.
The trip on public transport takes roughly 25 minutes.
Get your trip off to a relaxed start by staying near HER. Whether you're catching an early flight from Crete Heraklion Airport to Mykonos Airport or want to avoid feeling rushed, these stays are ideal:

Arriving at Mykonos Airport (JMK)

The last thing you need is a long trip to your hotel if you're getting in late on a Crete Heraklion Airport to Mykonos Airport flight. Stay at one of these accommodation options near JMK instead:
Get your adventure underway by picking up a Mykonos Airport rental car. Grab a set of wheels from Carwiz, VOLTA or Wheego and explore beyond Mykonos's main sights.
Get the best deal by booking your vehicle from Mykonos Airport around one week before your trip.

When to fly to Mykonos Airport (JMK)

It's time to work out your dates for your flight from Crete Heraklion Airport to Mykonos Airport. August is the most popular month to head to Mykonos. If you'd like a more relaxed vibe, go in December.
When reserving your flight from Crete Heraklion Airport to Mykonos Airport, think about the type of weather you enjoy. August is the warmest month in Mykonos, with the temperature ranging from 22ºC to 27ºC.
If you'd rather travel in cooler conditions, search for a cheap ticket from HER to JMK in January. Temperatures average between 8ºC and 15ºC then.

Explore more of Greece

You've done Mykonos, now it's time to explore more of Greece. Travel around 153 kilometres north-west to Athens to check off its top attractions. From Acropolis of Athens to The Parthenon and Erechtheion, you'll have a full itinerary ahead.
Around 418 kilometres north-west of Mykonos, Thessaloniki is another favourite stop in Greece. Experience major highlights starting with Church of Agia Sofia, Archaeological Museum of Thessaloniki and Alexander the Great Statue.